Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
glcF2GlcF2; Glycolate oxidase, iron-sulfur subunit GlcF. (435 aa)    
Predicted Functional Partners:
glcD3
GlcD3; Glycolate oxidase, FAD-linked subunit GlcD.
 
 0.986
ldhA
LdhA; Membrane-localized lactate dehydrogenase LdhA (GlcD homolog protein).
 
 0.972
glcD1
GlcD1; FAD/FMN-containing glycolate oxidase, subunit GlcD.
 
 0.971
glcD2
GlcD2; FAD-linked glycolate oxidase subunit GlcD.
 
 0.966
glcD4
GlcD4; (S)-2-hydroxy-acid dehydrogenase.
 
 0.963
glcF1
GlcF1; Glycolate oxidase, iron-sulfur subunit GlcF.
  
  
 
0.927
ldhB
LdhB; Membrane-localized lactate dehydrogenase LdhB (GlcF homolog, iron-sulfur cluster-binding protein).
  
  
 
0.919
aldA
AldA; Aldehyde dehydrogenase AldA; Belongs to the aldehyde dehydrogenase family.
  
 
 0.906
ACN13932.1
Aminotransferase, class V (putative purine catabolism protein PucG).
    
 0.905
gyaR
GyaR; Glyoxylate reductase GyaR; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.904
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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