Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACN15148.1 | ACN15149.1 | HRM2_20490 | HRM2_20500 | Hypothetical protein. | Methyl-accepting chemotaxis protein (Hemerythrin family protein). | 0.713 |
ACN15148.1 | hemL | HRM2_20490 | HRM2_20470 | Hypothetical protein. | HemL; Glutamate-1-semialdehyde 2,1-aminomutase HemL. | 0.777 |
ACN15148.1 | mpl | HRM2_20490 | HRM2_20480 | Hypothetical protein. | Mpl; Cell wall formation; Belongs to the MurCDEF family. | 0.777 |
ACN15149.1 | ACN15148.1 | HRM2_20500 | HRM2_20490 | Methyl-accepting chemotaxis protein (Hemerythrin family protein). | Hypothetical protein. | 0.713 |
ACN15149.1 | hemL | HRM2_20500 | HRM2_20470 | Methyl-accepting chemotaxis protein (Hemerythrin family protein). | HemL; Glutamate-1-semialdehyde 2,1-aminomutase HemL. | 0.717 |
ACN15149.1 | mpl | HRM2_20500 | HRM2_20480 | Methyl-accepting chemotaxis protein (Hemerythrin family protein). | Mpl; Cell wall formation; Belongs to the MurCDEF family. | 0.724 |
caiC3 | hemL | HRM2_40070 | HRM2_20470 | CaiC3; acyl-CoA synthetase (AMP-forming)/AMP-acid ligase CaiC. | HemL; Glutamate-1-semialdehyde 2,1-aminomutase HemL. | 0.703 |
cysG | hemA | HRM2_10890 | HRM2_10870 | CysG; Siroheme synthase (uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase; sirohydrochlorin ferrochelatase). | HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.832 |
cysG | hemB | HRM2_10890 | HRM2_27990 | CysG; Siroheme synthase (uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase; sirohydrochlorin ferrochelatase). | HemB; Delta-aminolevulinic acid dehydratase HemB (porphobilinogensynthase); Belongs to the ALAD family. | 0.748 |
cysG | hemC | HRM2_10890 | HRM2_35950 | CysG; Siroheme synthase (uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase; sirohydrochlorin ferrochelatase). | HemC; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.953 |
cysG | hemD | HRM2_10890 | HRM2_35960 | CysG; Siroheme synthase (uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase; sirohydrochlorin ferrochelatase). | HemD; Porphyrin biosynthesis protein HemD [includes: uroporphyrin-III C-methyltransferase; uroporphyrinogen-III synthase]. | 0.999 |
cysG | hemL | HRM2_10890 | HRM2_20470 | CysG; Siroheme synthase (uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase; sirohydrochlorin ferrochelatase). | HemL; Glutamate-1-semialdehyde 2,1-aminomutase HemL. | 0.939 |
fucA | hemL | HRM2_13630 | HRM2_20470 | FucA; L-fuculose phosphate aldolase. | HemL; Glutamate-1-semialdehyde 2,1-aminomutase HemL. | 0.695 |
hemA | cysG | HRM2_10870 | HRM2_10890 | HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | CysG; Siroheme synthase (uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase; sirohydrochlorin ferrochelatase). | 0.832 |
hemA | hemB | HRM2_10870 | HRM2_27990 | HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | HemB; Delta-aminolevulinic acid dehydratase HemB (porphobilinogensynthase); Belongs to the ALAD family. | 0.890 |
hemA | hemC | HRM2_10870 | HRM2_35950 | HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | HemC; Tetrapolymerization of the monopyrrole PBG into the hydroxymethylbilane pre-uroporphyrinogen in several discrete steps. Belongs to the HMBS family. | 0.996 |
hemA | hemD | HRM2_10870 | HRM2_35960 | HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | HemD; Porphyrin biosynthesis protein HemD [includes: uroporphyrin-III C-methyltransferase; uroporphyrinogen-III synthase]. | 0.954 |
hemA | hemL | HRM2_10870 | HRM2_20470 | HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | HemL; Glutamate-1-semialdehyde 2,1-aminomutase HemL. | 0.990 |
hemB | cysG | HRM2_27990 | HRM2_10890 | HemB; Delta-aminolevulinic acid dehydratase HemB (porphobilinogensynthase); Belongs to the ALAD family. | CysG; Siroheme synthase (uroporphyrin-III C-methyltransferase; precorrin-2 dehydrogenase; sirohydrochlorin ferrochelatase). | 0.748 |
hemB | hemA | HRM2_27990 | HRM2_10870 | HemB; Delta-aminolevulinic acid dehydratase HemB (porphobilinogensynthase); Belongs to the ALAD family. | HemA; Catalyzes the NADPH-dependent reduction of glutamyl-tRNA(Glu) to glutamate 1-semialdehyde (GSA). | 0.890 |
page 1 of 3