STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspA1UspA1; Universal stress protein UspA. (164 aa)    
Predicted Functional Partners:
ACN15192.1
TRAP-type transporter, 4TM/12TM fusion protein (permease).
  
    0.784
ACN15191.1
TRAP-type transporter, periplasmic solute binding receptor (TAXI family protein).
       0.752
usp2
Usp2; Universal stress protein Usp.
  
     0.742
uspA14
UspA14; Universal stress protein UspA6.
  
     0.737
usp1
Usp1; Universal stress protein Usp.
  
     0.732
uspA2
UspA2; Universal stress protein UspA.
  
     0.697
uspA8
UspA8; Putative universal stress protein UspA.
  
     0.577
ACN13736.1
Putative hydrolase (alpha/beta fold protein).
  
  
 0.475
lepA
LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.
       0.414
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.