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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN15244.1Putative repressor TrpR (repressor of Trp operon). (119 aa)    
Predicted Functional Partners:
iorA2
IorA2; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.773
iorB2
IorB2; Indolepyruvate:ferredoxin oxidoreductase, beta subunit IorB2.
       0.773
paaK1
PaaK1; Phenylacetate-coenzyme A ligase PaaK1 (Phenylacetyl-CoA ligase) (PA-CoA ligase).
       0.773
dctP4
DctP4; TRAP-type C4-dicarboxylate transporter, periplasmatic component DctP4.
       0.757
dctQ4
DctQ4; TRAP-type C4-dicarboxylate permease, small subunit DctQ4.
       0.757
dctM4
DctM4; TRAP-type C4-dicarboxylate permease, large subunit DctM4.
       0.757
trpC
TrpC; Tryptophan biosynthesis protein TrpC (anthranilate synthase complex).
     
 0.584
minE
MinE; Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell.
   
    0.519
lepB
LepB; Signal peptidase I (SPase I); Belongs to the peptidase S26 family.
   
    0.476
trpA
TrpA; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
     
 0.458
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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