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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dctM4DctM4; TRAP-type C4-dicarboxylate permease, large subunit DctM4. (434 aa)    
Predicted Functional Partners:
dctP4
DctP4; TRAP-type C4-dicarboxylate transporter, periplasmatic component DctP4.
 
  
 0.958
dctQ4
DctQ4; TRAP-type C4-dicarboxylate permease, small subunit DctQ4.
 
     0.945
ACN16572.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
 0.825
ACN16573.1
TRAP-type C4-dicarboxylate transport system, periplasmic component.
 
  
 0.799
dctP3
DctP3; TRAP-type C4-dicarboxylate transporter, periplasmatic component DctP3.
 
  
 0.792
iorB2
IorB2; Indolepyruvate:ferredoxin oxidoreductase, beta subunit IorB2.
       0.779
dctP7
DctP7; TRAP-type C4-dicarboxylate transporter, periplasmatic component DctP7.
 
  
 0.771
ACN15244.1
Putative repressor TrpR (repressor of Trp operon).
       0.757
iorA2
IorA2; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
       0.757
paaK1
PaaK1; Phenylacetate-coenzyme A ligase PaaK1 (Phenylacetyl-CoA ligase) (PA-CoA ligase).
       0.757
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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