STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspC3AspC3; Aspartate aminotransferase (Transaminase A) (AspAT). (441 aa)    
Predicted Functional Partners:
eriC2
EriC2; Voltage-gated chloride channel protein EriC.
 
   
 0.828
ACN15313.1
Hypothetical protein.
  
    0.582
ACN16803.1
Putative metal-dependent hydrolase of the beta-lactamase superfamily.
  
     0.572
ACN16274.1
Predicted polyketide synthase.
  
 
 0.530
porA4
PorA4; Pyruvate:ferredoxin oxidoreductase, subunit PorA4.
  
  
 0.476
gltB2
GltB2; Glutamate synthase [NADPH], large chain (NADPH-GOGAT).
  
  
 0.475
glmS
GlmS; Glucosamine--fructose-6-phosphate aminotransferase (D-fructose-6- phosphate amidotransferase) (GFAT) (L-glutamine-D-fructose-6-phosphate amidotransferase).
 
   
 0.463
atpI2
AtpI2; ATP synthase F0F1 protein AtpI2.
 
     0.436
lysA4
LysA4; Diaminopimelate decarboxylase LysA (DAP decarboxylase).
 
  
 0.415
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.