fdhB6 protein (Desulfobacterium autotrophicum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

fdhB6

FdhB6; Formate dehydrogenase, beta chain FdhB6 (4Fe-4S family protein). (375 aa)

Predicted Functional Partners:

porA4

0.958

mvhD6

0.922

ACN16451.1

0.919

hdrL2

0.915

fdhA3

0.908

fdhA4

0.908

fdhA6

0.908

ACN17399.1

0.903

ACN13468.1

0.900

cdhA

0.900

Your Current Organism:

Desulfobacterium autotrophicum

NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ACN13468.1	ACN16451.1	HRM2_03480	HRM2_33760	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	0.905
ACN13468.1	ACN17399.1	HRM2_03480	HRM2_43430	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	4Fe-4S iron-sulfur binding protein (ferredoxin).	0.908
ACN13468.1	cdhA	HRM2_03480	HRM2_16670	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	CdhA; Bifunctional acetyl-CoA synthetase/carbon monoxide dehydrogenase, alpha subunit CdhA (corrinoid/iron-sulfur protein).	0.919
ACN13468.1	fdhA3	HRM2_03480	HRM2_11880	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	FdhA3; NADH-dependent, cytoplasmic formate dehydrogenase, alpha chain FdhA3 (selenocysteine protein); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.916
ACN13468.1	fdhA4	HRM2_03480	HRM2_14370	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	FdhA4; Formate dehydrogenase, alpha chain FdhA4; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.916
ACN13468.1	fdhA6	HRM2_03480	HRM2_16890	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	FdhA6; NADH-dependent, cytoplasmic formate dehydrogenase FdhA6 (selenocysteine protein).	0.916
ACN13468.1	fdhB6	HRM2_03480	HRM2_22740	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	FdhB6; Formate dehydrogenase, beta chain FdhB6 (4Fe-4S family protein).	0.900
ACN16451.1	ACN13468.1	HRM2_33760	HRM2_03480	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	0.905
ACN16451.1	ACN17399.1	HRM2_33760	HRM2_43430	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	4Fe-4S iron-sulfur binding protein (ferredoxin).	0.972
ACN16451.1	cdhA	HRM2_33760	HRM2_16670	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	CdhA; Bifunctional acetyl-CoA synthetase/carbon monoxide dehydrogenase, alpha subunit CdhA (corrinoid/iron-sulfur protein).	0.907
ACN16451.1	fdhA3	HRM2_33760	HRM2_11880	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	FdhA3; NADH-dependent, cytoplasmic formate dehydrogenase, alpha chain FdhA3 (selenocysteine protein); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.948
ACN16451.1	fdhA4	HRM2_33760	HRM2_14370	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	FdhA4; Formate dehydrogenase, alpha chain FdhA4; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.948
ACN16451.1	fdhA6	HRM2_33760	HRM2_16890	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	FdhA6; NADH-dependent, cytoplasmic formate dehydrogenase FdhA6 (selenocysteine protein).	0.948
ACN16451.1	fdhB6	HRM2_33760	HRM2_22740	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	FdhB6; Formate dehydrogenase, beta chain FdhB6 (4Fe-4S family protein).	0.919
ACN16451.1	porA4	HRM2_33760	HRM2_49430	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	PorA4; Pyruvate:ferredoxin oxidoreductase, subunit PorA4.	0.617
ACN17399.1	ACN13468.1	HRM2_43430	HRM2_03480	4Fe-4S iron-sulfur binding protein (ferredoxin).	Formylmethanofuran dehydrogenase/molybdopterin biosynthesis fusion protein.	0.908
ACN17399.1	ACN16451.1	HRM2_43430	HRM2_33760	4Fe-4S iron-sulfur binding protein (ferredoxin).	Iron sulfur cluster binding protein (4Fe-4S ferredoxin family protein).	0.972
ACN17399.1	cdhA	HRM2_43430	HRM2_16670	4Fe-4S iron-sulfur binding protein (ferredoxin).	CdhA; Bifunctional acetyl-CoA synthetase/carbon monoxide dehydrogenase, alpha subunit CdhA (corrinoid/iron-sulfur protein).	0.914
ACN17399.1	fdhA3	HRM2_43430	HRM2_11880	4Fe-4S iron-sulfur binding protein (ferredoxin).	FdhA3; NADH-dependent, cytoplasmic formate dehydrogenase, alpha chain FdhA3 (selenocysteine protein); Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.934
ACN17399.1	fdhA4	HRM2_43430	HRM2_14370	4Fe-4S iron-sulfur binding protein (ferredoxin).	FdhA4; Formate dehydrogenase, alpha chain FdhA4; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.934

page 1 of 5

Server load: low (34%) [HD]

Permalink

Network

Neighborhood

Experiments

Fusion

Databases

Cooccurrence

Textmining

Coexpression

© STRING Consortium 2025

Credits

Access

Info

About