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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBPilB; Type IV pilus biogenesis protein PilB. (739 aa)    
Predicted Functional Partners:
gspF1
GspF1; General secretion pathway protein F.
 
 0.926
pilC
PilC; Type IV pilus assembly protein PilC.
 
 0.926
gspF2
GspF2; General secretion pathway protein GspF (Type II secretory pathway).
 
 0.926
ACN14247.1
Putative general secretion pathway protein L.
  
 
 0.925
gspL
GspL; General secretion pathway protein GspL.
  
 
 0.912
pilD
PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.871
pilM
PilM; Fimbrial assembly membrane protein PilM.
 
 
 0.721
gspG1
GspG1; General secretion pathway protein G [precursor].
 
 
 0.713
comE
ComE; DNA internalization-related competence protein ComE.
  
  
 0.699
ACN14535.1
FAD/NADPH dehydrogenase/oxidoreductase family protein (4Fe-4S ferredoxin).
  
 
 0.690
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.