STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wecBWecB; UDP-N-acetylglucosamine 2-epimerase WecB (UDP-GlcNAc-2- epimerase); Belongs to the UDP-N-acetylglucosamine 2-epimerase family. (366 aa)    
Predicted Functional Partners:
wecC
WecC; NAD-binding UDP-glucose 6-dehydrogenase WecC (UDP-Glc dehydrogenase) (UDP-GlcDH) (UDPGDH); Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 0.999
ispL
IspL; UDP-glucose 4-epimerase IspL (Galactowaldenase) (UDP-galactose 4-epimerase).
  
 
 0.969
ACN16729.1
Putative polysaccharide biosynthesis protein (NAD-dependent epimerase/dehydratase family protein).
  
 
 0.945
ACN16581.1
Predicted nucleoside-diphosphate-sugar pyrophosphorylase.
    
 0.924
glmU
GlmU; N-acetylglucosamine-1-phosphate uridyltransferase GlmU.
    
 0.921
murA
MurA; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
  
 
 0.920
lpxA
LpxA; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell.
    
  0.825
rfbB
RfbB; dTDP-glucose 4,6-dehydratase RfbB; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
  
 0.756
ugd
Ugd; UDP-glucose 6-dehydrogenase Ugd.
 
  
 0.707
neuA
NeuA; N-acylneuraminate cytidylyltransferase (CMP-N-acetylneuraminic acid synthetase) (CMP-NeuNAc synthetase) (CMP-sialic acid synthetase).
  
  
 0.688
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.