STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiPCbiP; Cobalamin (vitamin B12) biosynthesis protein, predicted accessory protein CbiP. (267 aa)    
Predicted Functional Partners:
cbiM
CbiM; Cobalamin (vitamin B12) biosynthesis protein CbiM.
  
 0.996
cbiN
CbiN; ABC-type cobalt importer, accessory protein CbiN (transmembrane protein).
 
  
  0.995
cbiQ1
CbiQ1; ABC-type cobalt importer, permease protein CbiQ1.
 
  
 0.991
cbiO1
CbiO1; ABC-type cobalamin importer, ATP-binding protein CbiO1.
 
  
 0.991
apbE
ApbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
  
    0.537
ACN15413.1
Conserved hypothetical protein.
       0.444
ACN15412.1
Hypothetical protein.
       0.431
ACN13871.1
Multiheme cytochrome family protein.
  
     0.406
ACN14864.1
HTH-type transcriptional regulator; Belongs to the ABC transporter superfamily.
 
   
 0.403
cydA3
CydA3; Cytochrome b deoxydase CydA (selenocysteine protein).
  
     0.401
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.