cspB1 protein (Desulfobacterium autotrophicum)

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cspB1

CspB1; Cold shock protein CspB. (66 aa)

Predicted Functional Partners:

rpsL

0.505

rapA

0.504

recD1

0.476

rpsQ

0.474

rpmA

0.471

rplT

0.470

rpmE

0.455

rplS

0.446

rplC

0.442

rpsE

0.438

Your Current Organism:

Desulfobacterium autotrophicum

NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
cspB1	rapA	HRM2_23460	HRM2_40500	CspB1; Cold shock protein CspB.	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	0.504
cspB1	recD1	HRM2_23460	HRM2_23450	CspB1; Cold shock protein CspB.	RecD1; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.	0.476
cspB1	rplC	HRM2_23460	HRM2_36260	CspB1; Cold shock protein CspB.	RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.442
cspB1	rplS	HRM2_23460	HRM2_30960	CspB1; Cold shock protein CspB.	RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.446
cspB1	rplT	HRM2_23460	HRM2_04600	CspB1; Cold shock protein CspB.	RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.470
cspB1	rpmA	HRM2_23460	HRM2_31710	CspB1; Cold shock protein CspB.	RpmA; 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family.	0.471
cspB1	rpmE	HRM2_23460	HRM2_17070	CspB1; Cold shock protein CspB.	RpmE; Binds the 23S rRNA.	0.455
cspB1	rpsE	HRM2_23460	HRM2_36090	CspB1; Cold shock protein CspB.	RpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.438
cspB1	rpsL	HRM2_23460	HRM2_36300	CspB1; Cold shock protein CspB.	RpsL; With S4 and S5 plays an important role in translational accuracy.	0.505
cspB1	rpsQ	HRM2_23460	HRM2_36170	CspB1; Cold shock protein CspB.	RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.474
rapA	cspB1	HRM2_40500	HRM2_23460	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	CspB1; Cold shock protein CspB.	0.504
rapA	rplC	HRM2_40500	HRM2_36260	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	0.860
rapA	rplT	HRM2_40500	HRM2_04600	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	RplT; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.405
rapA	rpsE	HRM2_40500	HRM2_36090	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	RpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family.	0.710
rapA	rpsL	HRM2_40500	HRM2_36300	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	RpsL; With S4 and S5 plays an important role in translational accuracy.	0.470
rapA	rpsQ	HRM2_40500	HRM2_36170	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.474
recD1	cspB1	HRM2_23450	HRM2_23460	RecD1; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.	CspB1; Cold shock protein CspB.	0.476
rplC	cspB1	HRM2_36260	HRM2_23460	RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	CspB1; Cold shock protein CspB.	0.442
rplC	rapA	HRM2_36260	HRM2_40500	RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	RapA; RNA polymerase associated protein RapA (ATP-dependent helicase HepA).	0.860
rplC	rplS	HRM2_36260	HRM2_30960	RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.	RplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.990

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