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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livM4LivM4; ABC-type high affinity branched-chain amino acid transporter, permease protein LivM; Belongs to the binding-protein-dependent transport system permease family. (436 aa)    
Predicted Functional Partners:
livH4
LivH4; ABC-type high affinity branched-chain amino acid transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
livG4
LivG4; ABC-type high affinity branched-chain amino acid transporter, ATP-binding component LivG.
  
 0.987
livF4
LivF4; ABC-type high affinity branched-chain amino acid transporter, ATP-binding protein LivF (ATPase).
  
 0.973
livH2
LivH2; Branched-chain amino acid ABC-type transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
  
 0.942
livG1
LivG1; Branched-chain amino acid transporter, ATP-binding component LivG.
  
 0.939
livH1
LivH1; High-affinity branched-chain amino acid transporter, permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
  
 0.936
livG5
LivG5; High-affinity branched-chain amino acid transport ATP-binding protein livG.
  
 0.936
ACN16455.1
ABC-type branched-chain amino acid transport system, permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 0.933
braF
BraF; Branched-chain amino acid transport ATP-binding protein BraF.
  
 0.931
livG2
LivG2; Branched-chain amino acid ABC-type transporter, ATP-binding protein LivG.
  
 0.929
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.