STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
msbA2MsbA2; ABC-type transporter, ATP-binding protein MsbA. (614 aa)    
Predicted Functional Partners:
ACN16564.1
ABC-type spermidine/putrescine transport system, ATPase component; Belongs to the ABC transporter superfamily.
 
   
0.813
ACN16274.1
Predicted polyketide synthase.
  
 0.745
ACN15643.1
Hypothetical protein.
 
     0.588
ACN14004.1
Conserved hypothetical protein; Belongs to the AAA ATPase family.
 
 0.560
ACN15646.1
Hypothetical protein.
       0.556
ACN15648.1
Hypothetical protein.
       0.516
ACN15639.1
Hypothetical protein.
 
     0.513
gumC2
GumC2; Exopolysaccharide biosynthesis protein GumC (tyrosine-protein kinase).
     
 0.468
ACN17018.1
DNA deoxyribo-dipyrimidine photolyase family protein.
   
 
 0.464
ACN15652.1
O-antigen polymerase involved in exopolysaccharide biosynthesis.
 
  
 0.451
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.