STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gumC2GumC2; Exopolysaccharide biosynthesis protein GumC (tyrosine-protein kinase). (727 aa)    
Predicted Functional Partners:
rfbP
RfbP; Undecaprenyl-phosphate (UDP)-galactose-phosphotransferase RfbP (Galactosyl-P-P-undecaprenol synthetase).
 
  
 0.995
gumA
GumA; Periplasmic exopolysaccharide export protein GumA.
 
 
 0.995
cpsE
CpsE; Galactosyl transferase CspE (type III capsular polysaccharide synthesis).
 
  
 0.994
ACN15071.1
Periplasmic polysaccharide export protein.
 
 
 0.973
ACN15652.1
O-antigen polymerase involved in exopolysaccharide biosynthesis.
 
  
 0.967
ACN15649.1
Conserved hypothetical protein.
 
   
 0.954
ACN15639.1
Hypothetical protein.
 
 
 0.945
ACN16305.1
Predicted glycosyltransferase.
 
  
 0.932
ACN15699.1
Hypothetical protein.
  
 
 0.919
ACN15700.1
Hypothetical protein.
  
 
 0.919
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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