Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
ACN15729.1Predicted phage-specific integrase. (338 aa)    
Predicted Functional Partners:
ACN15730.1
Phage-specific recombinase/integrase XerD; Belongs to the 'phage' integrase family.
 
     0.950
xerC
XerC; Phage-specific tyrosine recombinase/integrase XerC; Belongs to the 'phage' integrase family.
 
     0.946
ACN17494.1
Integrase/recombinase family protein; Belongs to the 'phage' integrase family.
 
     0.809
ACN15727.1
Retron-type reverse transcriptase (RNA-directed DNA polymerase).
 
  
 0.630
ACN15726.1
Putative reverse transcriptase/maturase family protein.
  
  
 0.534
ACN17534.1
Transposase family protein.
 
     0.506
ACN17533.1
Transposase family protein.
 
     0.494
comF
ComF; Competence protein F (Phosphoribosyltransferase family protein).
   
    0.464
tyrA
TyrA; Chorismate mutase/prephenate dehydrogenase.
  
    0.450
ACN14364.1
Transposase for insertion sequence 801 (transposase 32 family protein).
 
     0.402
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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