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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cysS3CysS3; cysteinyl-tRNA synthetase CysS3 (cysteine--tRNA ligase) (CysRS). (759 aa)    
Predicted Functional Partners:
cysE2
CysE2; Serine O-acetyltransferase CysE2 (bacterial transferase hexapeptide repeat family).
 
 0.987
cysE1
CysE1; Serine O-acetyltransferase CysE1 (bacterial transferase hexapeptide repeat family).
 
 0.986
cysS2
CysS2; cysteinyl-tRNA synthetase CysS2 (Cysteine--tRNA ligase) (CysRS); Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
0.926
cysS1
CysS1; Bifunctional cysteinyl-tRNA synthetase CysS1 (Cysteine--tRNA ligase) (CysRS); Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
0.920
metS
MetS; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
 
  
 0.869
mdeA
MdeA; Methionine gamma-lyase MdeA (L-methionase).
 
 
 0.854
tmk
Tmk; Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis; Belongs to the thymidylate kinase family.
     
 0.835
ACN15767.1
Hypothetical protein.
       0.805
leuS
LeuS; leucyl-tRNA synthetase LeuS (Leucine--tRNA ligase); Belongs to the class-I aminoacyl-tRNA synthetase family.
 
 
 0.757
ACN13981.1
HTH-type transcriptional repressor (LacI family protein).
   
 
 0.753
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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