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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cbiQ2CbiQ2; ABC-type cobalt importer, permease protein CbiQ2. (251 aa)    
Predicted Functional Partners:
ACN15787.1
BioY family protein.
 
 0.997
cbiO2
CbiO2; ABC-type cobalt importer, ATP-binding protein CbiO2.
 
 0.997
cbiM
CbiM; Cobalamin (vitamin B12) biosynthesis protein CbiM.
  
 
 0.917
cbiO4
CbiO4; ABC-type cobalt importer, ATP-binding protein CbiO4.
 
 
 0.912
birA
BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
   
 0.885
cbiO1
CbiO1; ABC-type cobalamin importer, ATP-binding protein CbiO1.
  
 
 0.833
ACN14864.1
HTH-type transcriptional regulator; Belongs to the ABC transporter superfamily.
  
 
 0.828
appF1
AppF1; ABC-type oligopeptide transport system, ATPase component AppF; Belongs to the ABC transporter superfamily.
  
 
 0.704
dppD1
DppD1; ABC-type oliopeptide/dipeptide transporter, ATP-binding protein DppD; Belongs to the ABC transporter superfamily.
  
 
 0.704
dppF2
DppF2; ABC-type dipeptide transport system, ATPase component DppF; Belongs to the ABC transporter superfamily.
  
 
 0.704
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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