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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN15871.1Peptidase M23/M37 family protein. (459 aa)    
Predicted Functional Partners:
lepB
LepB; Signal peptidase I (SPase I); Belongs to the peptidase S26 family.
 
  
 0.697
ACN15875.1
Putative organic solvent tolerance protein OstA precursor.
 
   
 0.694
rpoN
RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
    0.647
kdsA
KdsA; 2-dehydro-3-deoxyphosphooctonate aldolase KdsA; Belongs to the KdsA family.
       0.598
amiC
AmiC; N-acetylmuramoyl-L-alanine amidase A.
 
  
 0.591
kdsC
KdsC; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase KdsC.
       0.591
ACN15876.1
Unclassified ABC-type transport system, ATPase component.
       0.582
ACN15870.1
Conserved hypothetical protein.
       0.578
smpA
SmpA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
  
 0.564
ACN15874.1
Hypothetical protein.
  
    0.551
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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