STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glyQGlyQ; glycyl-tRNA synthetase, alpha chain GlyQ. (299 aa)    
Predicted Functional Partners:
glyS
GlyS; glycyl-tRNA synthetase, beta chain GlyS.
 0.999
hisS
HisS; histidyl-tRNA synthetase HisS (Histidine--tRNA ligase) (HisRS).
 
  
 0.842
recO
RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.782
ACN15904.1
Putative galactokinase.
       0.775
ppiD2
PpiD2; Peptidyl-prolyl cis-trans isomerase protein PpiD.
  
  
 0.766
mgtE2
MgtE2; Acts as a magnesium transporter.
       0.751
ACN15901.1
Hypothetical protein.
       0.730
ppiC2
PpiC2; Parvulin-like peptidyl-prolyl isomerase protein PpiC.
  
  
 0.709
pheS
PheS; phenylalanyl-tRNA synthetase, alpha subunit; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
   
  
 0.707
ileS
IleS; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily.
 
  
 0.703
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.