STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ppiD2PpiD2; Peptidyl-prolyl cis-trans isomerase protein PpiD. (314 aa)    
Predicted Functional Partners:
ppiC2
PpiC2; Parvulin-like peptidyl-prolyl isomerase protein PpiC.
       0.817
recO
RecO; Involved in DNA repair and RecF pathway recombination.
     
 0.772
glyQ
GlyQ; glycyl-tRNA synthetase, alpha chain GlyQ.
  
  
 0.766
ostA
OstA; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
 
  
 0.765
ACN15904.1
Putative galactokinase.
       0.745
mgtE2
MgtE2; Acts as a magnesium transporter.
   
   0.726
ppiC1
PpiC1; Peptidyl-prolyl cis-trans isomerase PpiC.
 
  
 0.712
glyS
GlyS; glycyl-tRNA synthetase, beta chain GlyS.
  
    0.701
ACN15339.1
Outer membrane protein (putative surface antigen).
 
 
 0.695
bamD
Putative DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
  
 0.654
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.