STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppEDppE; ABC-type dipeptide/oligopeptide/nickel transport system, periplasmic binding protein DppE. (628 aa)    
Predicted Functional Partners:
dppD2
DppD2; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component DppD; Belongs to the ABC transporter superfamily.
 
  
 0.886
dppF1
DppF1; ABC-type dipeptide/oligopeptide/nickel transport system, ATP binding component DppF; Belongs to the ABC transporter superfamily.
 
 
 0.880
ACN15824.1
Dipeptide/oligopeptide transport system, inner membrane permease component.
 
   
 0.784
ACN15823.1
Dipeptide/oligopeptide transport system, inner membrane permease component.
 
     0.777
ACN15946.1
Hypothetical protein.
  
    0.751
ACN15944.1
Hypothetical protein.
  
    0.746
ACN15945.1
Hypothetical protein.
       0.746
porA4
PorA4; Pyruvate:ferredoxin oxidoreductase, subunit PorA4.
  
  
 0.654
ACN15950.1
Hypothetical protein.
       0.572
appB
AppB; ABC-type oligopeptide transporter, permease protein AppB.
 
 
 0.554
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.