STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
argA1ArgA1; Arginase family protein ArgA; Belongs to the arginase family. (285 aa)    
Predicted Functional Partners:
rocD1
RocD1; Ornithine aminotransferase RocD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.994
rocD2
RocD2; Ornithine aminotransferase RocD; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.989
speA
SpeA; Catalyzes the biosynthesis of agmatine from arginine. Belongs to the Orn/Lys/Arg decarboxylase class-II family. SpeA subfamily.
  
 
 0.935
argF
ArgF; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
    
 0.920
ACN14131.1
Decarboxylase family protein; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.918
argJ
ArgJ; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family.
     
 0.915
fumC
FumC; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
 
    
 0.862
argH2
ArgH2; Argininosuccinate lyase ArgH (Arginosuccinase) (ASAL).
     
 0.831
ACN15976.1
ATP-dependent DEAD/DEAH box helicase family protein.
       0.779
ftcD1
FtcD1; Formimidoyltransferase-cyclodeaminase FtcD.
  
    0.764
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.