STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspD2GspD2; General secretion pathway protein GspD. (761 aa)    
Predicted Functional Partners:
gspL
GspL; General secretion pathway protein GspL.
 
  
 0.952
gspC
GspC; General secretion pathway protein C (type II secretion system protein C).
 
 
 0.936
gspD1
GspD1; General secretion pathway protein D (type II secretion system protein D).
  
  
 
0.925
gspK2
GspK2; General secretion pathway protein GspK.
 
   
 0.913
gspJ2
GspJ2; General secretion pathway protein GspK.
 
  
 0.884
gspI
GspI; General secretion pathway protein GspI.
 
  
 0.867
gspG2
GspG2; General secretion pathway protein GspG (Type II secretory pathway).
 
  
 0.832
gspG1
GspG1; General secretion pathway protein G [precursor].
  
 0.831
ACN16096.1
Hypothetical protein.
     
 0.795
ACN16095.1
Hypothetical protein.
       0.781
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.