STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspIGspI; General secretion pathway protein GspI. (138 aa)    
Predicted Functional Partners:
gspK2
GspK2; General secretion pathway protein GspK.
 
 
 0.979
gspJ2
GspJ2; General secretion pathway protein GspK.
 
     0.950
gspL
GspL; General secretion pathway protein GspL.
 
  
 0.927
ACN14250.1
Putative general secretion pathway protein.
     
  0.900
gspD2
GspD2; General secretion pathway protein GspD.
 
  
 0.867
gspJ1
GspJ1; General secretion pathway protein GspJ [precursor].
  
 
 0.798
ACN16101.1
Hypothetical protein.
  
  
 0.754
gspH
GspH; General secretion pathway protein GspH (Type II secretory pathway membrane protein).
 
     0.751
btuB2
BtuB2; Outer membrane cobalamin (Vitamin B12) translocator/receptor protein BtuB.
 
     0.692
comE
ComE; DNA internalization-related competence protein ComE.
 
  
 0.679
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.