STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN16150.1Transposase (IS4 element). (517 aa)    
Predicted Functional Partners:
gumC2
GumC2; Exopolysaccharide biosynthesis protein GumC (tyrosine-protein kinase).
  
 
 0.919
cpsE
CpsE; Galactosyl transferase CspE (type III capsular polysaccharide synthesis).
 
  
 0.840
rfbP
RfbP; Undecaprenyl-phosphate (UDP)-galactose-phosphotransferase RfbP (Galactosyl-P-P-undecaprenol synthetase).
  
  
 0.816
ACN15551.1
Putative adenylate cyclase family protein.
  
     0.715
ACN16151.1
Conserved hypothetical protein.
 
     0.609
ACN14292.1
Hypothetical protein.
  
     0.601
ACN16081.1
Putative ABC-type transporter, ATPase protein.
  
  
 0.595
gumC1
GumC1; Protein GumC involved in exopolysaccharide biosynthesis.
  
 
 0.590
ACN16082.1
Putative ABC-type transporter, permease protein.
  
  
 0.590
ACN15615.1
Conserved hypothetical protein.
  
     0.575
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.