STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fdx8Fdx8; 4Fe-4S ferredoxin, iron-sulfur binding family protein Fdx8. (649 aa)    
Predicted Functional Partners:
cdhE
CdhE; Bifunctional acetyl-CoA synthetase/carbon monoxide dehydrogenase, gamma subunit CdhE.
 
   0.890
cdhD
CdhD; Bifunctional acetyl-CoA synthetase/carbon monoxide dehydrogenase, delta subunit CdhD.
 
 
   0.869
fdx7
Fdx7; 4Fe-4S ferredoxin, iron-sulfur binding family protein Fdx7.
 
    
0.806
cdhC
CdhC; Bifunctional acetyl-CoA synthetase/carbon monoxide dehydrogenase, beta subunit CdhC.
 
     0.801
ACN15942.1
Conserved hypothetical protein.
 
 
   0.785
metH3
MetH3; vitamin-B12 dependent methionine synthase MetH (5-methyltetrahydrofolate--homocysteine methyltransferase).
 
 
 
 0.749
acsF
AcsF; Carbon monoxide dehydrogenase nickel-insertion accessory protein AcsF.
 
     0.744
ACN13246.1
Putative methionine synthase I metH2.
 
 
 
 0.730
ACN16539.1
Hypothetical protein.
 
 
   0.726
ACN13161.1
Predicted Fe-S cluster protein.
  
     0.714
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.