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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ntrANtrA; Nitrate uptake ABC-transporter, periplasmic binding protein NtrA. (401 aa)    
Predicted Functional Partners:
ntrB
NtrB; Nitrate uptake ABC-transporter, permease protein NtrB.
 
  
 0.969
ntrC2
NtrC2; Nitrate uptake ABC-transporter, ATP-binding protein NtrC.
  
 0.965
ACN16193.1
Predicted ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component.
 
     0.947
ACN13909.1
ABC-type transporter, membrane spanning protein.
 
  
 0.859
ACN13277.1
ABC-type transporter, permease protein (membrane spanning protein).
 
  
 0.835
ACN13910.1
ABC-type transporter, ATP-binding protein.
  
 0.822
ACN13225.1
ABC-type transporter, permease protein (nitrate/sulfonate/bicarbonate transporter).
 
  
 0.780
ssuC
SsuC; Sulfonate ABC-type transporter Ssu, permease protein SsuC.
 
  
 0.774
ACN13276.1
ABC-type transporter, ATP-binding protein (ATPase).
  
 0.745
ACN13224.1
ABC-type transporter, ATP-binding protein (ATPase).
  
 0.714
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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