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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACN16273.1Sigma-54 dependent transcriptional regulator. (497 aa)    
Predicted Functional Partners:
ACN16272.1
Putative 1-acyl-sn-glycerol-3-phosphate acyltransferase.
 
     0.753
ACN16274.1
Predicted polyketide synthase.
 
   
 0.659
rpoN
RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.625
ACN14535.1
FAD/NADPH dehydrogenase/oxidoreductase family protein (4Fe-4S ferredoxin).
   
 
 0.525
ACN14533.1
HTH-type transcriptional regulator.
  
   
 0.491
ACN13480.1
Putative aerobic respiration control sensor protein ArcB.
   
 
 0.488
ACN17648.1
Hypothetical protein.
  
     0.463
ACN17656.1
Signal transduction histidine kinase.
 
 
 
 0.443
ACN16392.1
Multiple domain fusion protein (Zn-finger domain associated with topoisomerase type I/adhesin of Type V secretory pathway).
  
     0.407
ACN13902.1
Two domain sensory box histidine kinase (methyl-accepting chemotaxis transducer/Ntr-family protein).
   
 
 0.406
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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