STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nox1Nox1; NADH oxidase (NOXase). (568 aa)    
Predicted Functional Partners:
ACN16422.1
Predicted assimilatory-type nitrite/sulfite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
  
 0.926
rpsQ
RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
 0.853
rplM
RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.
   
 
 0.849
rplQ
RplQ; 50S ribosomal protein L17.
  
   0.848
rplO
RplO; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
  
 
 0.848
rplC
RplC; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family.
  
   0.846
ACN14152.1
Hypothetical protein.
   
 
 0.845
rpmE
RpmE; Binds the 23S rRNA.
  
  
 0.836
ribE
RibE; Riboflavin synthase, alpha chain RibE.
  
    0.835
ACN15506.1
Iron-sulfur cluster-binding protein (Rieskeprotein, 2Fe-2S protein).
  
 
 0.815
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.