STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
acsL3AcsL3; long-chain-fatty-acid-CoA ligase AcsL3 (AMP-binding protein). (501 aa)    
Predicted Functional Partners:
caiC3
CaiC3; acyl-CoA synthetase (AMP-forming)/AMP-acid ligase CaiC.
 
     0.891
ACN16274.1
Predicted polyketide synthase.
  
 0.887
fadB
FadB; 3-hydroxyacyl-CoA dehydrogenase FadB.
  
 
 0.571
acsM1
AcsM1; middle-chain-fatty-acid-acyl-CoA synthetase AcsM1 (AMP-binding protein).
 
 
0.530
acsM4
AcsM4; middle-chain-fatty-acid-acyl-CoA synthetase AcsM4 (AMP-binding protein).
 
 
0.520
rplF
RplF; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
 0.514
acsM2
AcsM2; middle-chain-fatty-acid-acyl-CoA synthetase AcsM2 (AMP-binding protein).
 
 
0.511
ACN16399.1
Putative amino-acid acetyltransferase.
  
 0.509
acsA1
AcsA1; acetyl-CoA synthetase/acetate-CoA ligase AcsA1 (AMP-binding protein).
 
0.484
rplB
RplB; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family.
   
 
 0.471
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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