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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbsCRbsC; ABC-type ribose transport system, permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family. (313 aa)    
Predicted Functional Partners:
rbsB
RbsB; ABC-type ribose transport system, periplasmic D-ribose-binding protein RsbB [precursor].
 
 
 0.995
rbsA2
RbsA2; ABC-type ribose transport system, ATP-binding protein RbsA (ATPase).
 
 0.995
ACN13981.1
HTH-type transcriptional repressor (LacI family protein).
 
  
 0.847
ACN16535.1
Putative sugar (pentulose and hexulose) kinase.
 
  
 0.753
rbsA1
RbsA1; Ribose binding ABC-type transporter, ATP-binding protein RbsA.
 
     0.641
ACN17683.1
Putative ABC sugar transporter, fused ATPase subunits.
 
     0.634
ACN15668.1
ABC-type sugar transport system, periplamsic solute-binding protein.
 
   
 0.598
pfkB2
PfkB2; Carbohydrate kinase family protein PfkB2.
 
  
 0.555
mtp
Mtp; Multiphosphoryl transfer protein Mtp (PTS system, EIIA, EIIB, EIII-Fru transfer domains).
  
   
 0.511
cstA
CstA; Carbon starvation protein CstA.
   
    0.506
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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