Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACN16616.1 | ACN16617.1 | HRM2_35510 | HRM2_35520 | FAD-binding oxidoreductase (iron-sulfur cluster-binding domain protein). | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.779 |
| ACN16616.1 | prfC | HRM2_35510 | HRM2_35480 | FAD-binding oxidoreductase (iron-sulfur cluster-binding domain protein). | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.699 |
| ACN16616.1 | sat1 | HRM2_35510 | HRM2_25160 | FAD-binding oxidoreductase (iron-sulfur cluster-binding domain protein). | Sat1; Bifunctional sulfate adenyltransferase Sat1 (ATP sulfurylase (SUL) / adenylylsulfate kinase (KIN) domain). | 0.440 |
| ACN16616.1 | serA1 | HRM2_35510 | HRM2_35500 | FAD-binding oxidoreductase (iron-sulfur cluster-binding domain protein). | SerA1; D-3-phosphoglycerate dehydrogenase SerA (PGDH); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.811 |
| ACN16616.1 | serC | HRM2_35510 | HRM2_35490 | FAD-binding oxidoreductase (iron-sulfur cluster-binding domain protein). | SerC; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.815 |
| ACN16617.1 | ACN16616.1 | HRM2_35520 | HRM2_35510 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | FAD-binding oxidoreductase (iron-sulfur cluster-binding domain protein). | 0.779 |
| ACN16617.1 | prfC | HRM2_35520 | HRM2_35480 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.655 |
| ACN16617.1 | serA1 | HRM2_35520 | HRM2_35500 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | SerA1; D-3-phosphoglycerate dehydrogenase SerA (PGDH); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.779 |
| ACN16617.1 | serC | HRM2_35520 | HRM2_35490 | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | SerC; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.779 |
| gpmA1 | gpmA2 | HRM2_15490 | HRM2_31770 | GpmA1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. | GpmA2; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.954 |
| gpmA1 | serA1 | HRM2_15490 | HRM2_35500 | GpmA1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. | SerA1; D-3-phosphoglycerate dehydrogenase SerA (PGDH); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.920 |
| gpmA2 | gpmA1 | HRM2_31770 | HRM2_15490 | GpmA2; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | GpmA1; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate; Belongs to the phosphoglycerate mutase family. BPG- dependent PGAM subfamily. | 0.954 |
| gpmA2 | serA1 | HRM2_31770 | HRM2_35500 | GpmA2; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | SerA1; D-3-phosphoglycerate dehydrogenase SerA (PGDH); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.911 |
| prfC | ACN16616.1 | HRM2_35480 | HRM2_35510 | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | FAD-binding oxidoreductase (iron-sulfur cluster-binding domain protein). | 0.699 |
| prfC | ACN16617.1 | HRM2_35480 | HRM2_35520 | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | Conserved hypothetical protein; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit. | 0.655 |
| prfC | rplB | HRM2_35480 | HRM2_36230 | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | RplB; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.833 |
| prfC | rplF | HRM2_35480 | HRM2_36110 | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | RplF; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.712 |
| prfC | serA1 | HRM2_35480 | HRM2_35500 | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | SerA1; D-3-phosphoglycerate dehydrogenase SerA (PGDH); Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.699 |
| prfC | serC | HRM2_35480 | HRM2_35490 | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | SerC; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.663 |
| rplB | prfC | HRM2_36230 | HRM2_35480 | RplB; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | PrfC; Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF-1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. PrfC subfamily. | 0.833 |
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