Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| ACN16643.1 | pdxJ | HRM2_35780 | HRM2_35800 | Putative membrane assocoiated hydrolase of HD superfamily. | PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.799 |
| ACN16643.1 | phoH1 | HRM2_35780 | HRM2_35770 | Putative membrane assocoiated hydrolase of HD superfamily. | PhoH1; Phosphate starvation inducible PhoH-like protein (ATPase). | 0.831 |
| ACN16643.1 | ybeY | HRM2_35780 | HRM2_35790 | Putative membrane assocoiated hydrolase of HD superfamily. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.871 |
| ACN16648.1 | rplM | HRM2_35830 | HRM2_30470 | Putative metallo-beta-lactamase superfamily protein. | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.516 |
| ACN16648.1 | rplQ | HRM2_35830 | HRM2_35990 | Putative metallo-beta-lactamase superfamily protein. | RplQ; 50S ribosomal protein L17. | 0.540 |
| ACN16648.1 | rplU | HRM2_35830 | HRM2_31700 | Putative metallo-beta-lactamase superfamily protein. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.556 |
| ACN16648.1 | rplX | HRM2_35830 | HRM2_36150 | Putative metallo-beta-lactamase superfamily protein. | RplX; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.465 |
| ACN16648.1 | rpsQ | HRM2_35830 | HRM2_36170 | Putative metallo-beta-lactamase superfamily protein. | RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.844 |
| ACN16648.1 | ybeY | HRM2_35830 | HRM2_35790 | Putative metallo-beta-lactamase superfamily protein. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.857 |
| dgkA | ybeY | HRM2_10440 | HRM2_35790 | DgkA; Recycling of diacylglycerol produced during the turnover of membrane phospholipid. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.854 |
| pdxJ | ACN16643.1 | HRM2_35800 | HRM2_35780 | PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | Putative membrane assocoiated hydrolase of HD superfamily. | 0.799 |
| pdxJ | phoH1 | HRM2_35800 | HRM2_35770 | PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | PhoH1; Phosphate starvation inducible PhoH-like protein (ATPase). | 0.797 |
| pdxJ | ybeY | HRM2_35800 | HRM2_35790 | PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.936 |
| phoH1 | ACN16643.1 | HRM2_35770 | HRM2_35780 | PhoH1; Phosphate starvation inducible PhoH-like protein (ATPase). | Putative membrane assocoiated hydrolase of HD superfamily. | 0.831 |
| phoH1 | pdxJ | HRM2_35770 | HRM2_35800 | PhoH1; Phosphate starvation inducible PhoH-like protein (ATPase). | PdxJ; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino- 2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate. | 0.797 |
| phoH1 | ybeY | HRM2_35770 | HRM2_35790 | PhoH1; Phosphate starvation inducible PhoH-like protein (ATPase). | Conserved hypothetical protein; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.985 |
| rplM | ACN16648.1 | HRM2_30470 | HRM2_35830 | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Putative metallo-beta-lactamase superfamily protein. | 0.516 |
| rplM | rplQ | HRM2_30470 | HRM2_35990 | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | RplQ; 50S ribosomal protein L17. | 0.993 |
| rplM | rplU | HRM2_30470 | HRM2_31700 | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.991 |
| rplM | rplX | HRM2_30470 | HRM2_36150 | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | RplX; One of two assembly initiator proteins, it binds directly to the 5'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.994 |
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