STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
exeA4ExeA4; Type II secretory pathway, component ExeA (ATPase). (280 aa)    
Predicted Functional Partners:
ACN16739.1
Transposase/integrase family protein.
 
   
 0.930
exeA1
ExeA1; Type II secretory pathway, component ExeA (ATPase).
  
     0.773
exeA5
ExeA5; Type II secretory pathway, component ExeA (ATPase).
  
     0.773
gspA
GspA; General secretion pathway protein GspA.
  
     0.772
ACN13794.1
Putative general secretion pathway protein A.
  
     0.770
ACN16435.1
Transposase /integrase family protein.
 
   
 0.706
ACN16740.1
Putative transposase.
       0.548
ACN17494.1
Integrase/recombinase family protein; Belongs to the 'phage' integrase family.
  
     0.476
ACN16741.1
Hypothetical protein.
       0.418
gumC1
GumC1; Protein GumC involved in exopolysaccharide biosynthesis.
 
     0.413
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.