STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lysA4LysA4; Diaminopimelate decarboxylase LysA (DAP decarboxylase). (417 aa)    
Predicted Functional Partners:
dapF
DapF; Catalyzes the stereoinversion of LL-2,6-diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso-DAP), a precursor of L- lysine and an essential component of the bacterial peptidoglycan.
 
 0.947
ACN17636.1
Probable aspartokinase (Aspartate kinase); Belongs to the aspartokinase family.
   
 0.930
lysA3
LysA3; Diaminopimelate decarboxylase LysA; Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
  
 
0.922
lysA1
LysA1; Saccharopine dehydrogenase/saccharopine reductase LysA.
  
 
 0.913
lysC
LysC; Aspartokinase LysC (aspartate kinase); Belongs to the aspartokinase family.
    
 0.913
murE
MurE; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan. Belongs to the MurCDEF family. MurE subfamily.
     
 0.912
bioB2
BioB2; Biotin synthetase (Biotin synthetase).
    
 0.910
dapA
DapA; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
  
 0.859
ACN16798.1
HTH-type transcriptional regulator.
     
 0.810
kamA1
KamA1; Lysine 2,3-aminomutase KamA.
     
 0.800
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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