STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
proWProW; ABC-type glycine betaine transporter, permease protein ProW. (289 aa)    
Predicted Functional Partners:
proX
ProX; ABC-type glycine betaine transporter, periplasmic substrate binding protein ProX.
 
 0.999
proV
ProV; ABC-type glycine betaine transporter, ATP-binding protein ProV.
 0.999
ACN16049.1
ABC-type glycine betaine/proline transport system, periplasmic glycine betaine/proline-binding protein.
 
  
 0.931
ACN16865.1
Transcriptional regulator (MarR family protein).
       0.731
purN
PurN; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate.
   
  
 0.553
ACN16044.1
ABC-type glycine betaine/proline transport system, ATP-binding protein (ATPase).
 
  
 0.533
ACN17403.1
Putative Di- and tricarboxylate transporter.
  
  
 0.483
purM
PurM; Phosphoribosylformylglycinamidine cyclo-ligase PurM (AIRS).
   
    0.428
rplQ
RplQ; 50S ribosomal protein L17.
   
    0.402
rpsD
RpsD; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
   
    0.402
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.