STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gcdA2GcdA2; glutaconyl-CoA decarboxylase GcdA. (577 aa)    
Predicted Functional Partners:
ACN16923.1
Putative pyruvate carboxylase Pcb.
  
 0.970
ACN16910.1
Biotin-requiring enzyme (barrel sandwich hybrid superfamily).
  
 0.940
birA
BirA; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
 
 
 0.851
ACN16274.1
Predicted polyketide synthase.
 
 
 0.763
gctA
GctA; Glutaconate CoA-transferase, subunit GctA.
 
  
 0.707
gctB
GctB; Glutaconate CoA transferase, subunit GctB.
 
  
 0.663
mvaB
MvaB; hydroxymethylglutaryl-CoA lyase MvaB.
 
 0.629
acd12
Acd12; Short-chain specific acyl-CoA dehydrogenase/oxidase Acd12 (butyryl-CoA dehydrogenase).
  
 0.585
fumA
FumA; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
  
  
 0.583
pcaC
PcaC; 4-carboxymuconolactone decarboxylase PcaC.
 
     0.582
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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