STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gctAGctA; Glutaconate CoA-transferase, subunit GctA. (325 aa)    
Predicted Functional Partners:
gctB
GctB; Glutaconate CoA transferase, subunit GctB.
 0.999
ACN17013.1
Acetamidase/formamidase family protein.
     
  0.900
gcdA2
GcdA2; glutaconyl-CoA decarboxylase GcdA.
 
  
 0.707
ACN16923.1
Putative pyruvate carboxylase Pcb.
  
  
 0.690
gcdA1
GcdA1; glutaconyl-CoA decarboxylase GcdA.
 
  
 0.655
pcaC
PcaC; 4-carboxymuconolactone decarboxylase PcaC.
 
  
 0.634
ACN16910.1
Biotin-requiring enzyme (barrel sandwich hybrid superfamily).
  
  
 0.620
atoB4
AtoB4; acetyl-CoA acetyltransferase AtoB4 (Acetoacetyl-CoA thiolase); Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.613
atoB5
AtoB5; acetyl-CoA acetyltransferase AtoB5 (Acetoacetyl-CoA thiolase); Belongs to the thiolase-like superfamily. Thiolase family.
 
  
 0.584
ACN16274.1
Predicted polyketide synthase.
  
  
 0.581
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.