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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hyfEHyfE; Polytopic membrane protein HyfE (transmembrane subunit of hyf-complex). (215 aa)    
Predicted Functional Partners:
hyfB
HyfB; Polytopic membrane protein HyfB (transmembrane subunit of Hyf-complex).
 
  
 0.993
hyfG
HyfG; Hydrogenase HyfG homolog, large subunit.
 
  
 0.988
hyfI
HyfI; Hydrogenase HyfI homolog, small subunit.
 
  
 0.987
hyfC
HyfC; Polytopic membrane protein HyfC (transmembrane subunit of hyf-complex).
 
  
 0.980
hyfF
HyfF; Hydrogenase HyfF homolog (hydrogenase 4 family protein).
 
  
 0.972
nuoE
NuoE; NADH-ubiquinone oxidoreductase, 24 kD subunit.
      
 0.802
nuoF
NuoF; NADH-quinone oxidoreductase, NADH-binding subunit NuoF.
      
 0.802
ACN16961.1
ATP-dependent RNA helicase DbpA.
       0.638
dbpA
DbpA; ATP-dependent RNA helicase DbpA.
       0.638
rscR
RscR; HTH-type transcriptional regulator RscR (LysR-family protein); Belongs to the LysR transcriptional regulatory family.
       0.454
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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