Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
istA2IstA2; Transposase IstA (IS21 family protein). (499 aa)    
Predicted Functional Partners:
ACN17008.1
Transposase (IS21 family protein).
 
 0.974
istB3
IstB3; Transposition helper protein IstB.
 
 0.879
istB1
IstB1; Transposition helper protein IstB (ATP-binding protein).
 
 0.841
istB2
IstB2; Transpositon helper protein IstB.
 
 
 0.815
ACN17493.1
Putative ATP-binding family protein.
 
 
 0.813
ACN17010.1
Transposase (IS66 family protein).
       0.495
ACN17007.1
Transposase (IS66 family protein).
       0.418
ACN17011.1
Transposase (IS66 family protein).
       0.416
ACN17012.1
Hypothetical protein.
       0.416
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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