Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
mdtP1MdtP1; Cation/multidrug efflux pump, outer membrane efflux protein MdtP. (473 aa)    
Predicted Functional Partners:
tolC
TolC; Predicted outer membrane protein.
  
  
  0.974
arcE
ArcE; Cation/multidrug efflux pump, periplasmic resistance protein AcrE (Acriflavine resistance protein E precursor); Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 0.965
mdtP2
MdtP2; Cation/multidrug efflux pump, outer membrane efflux protein MdtP.
    
 0.963
ACN17792.1
Putative outer membrane protein.
  
  
 
0.928
ACN14687.1
Conserved hypothetical protein.
  
  
 
0.923
mdtQ
MdtQ; Outer membrane multidrug resistance protein MdtQ [precursor].
  
  
 
0.923
ACN17366.1
Putative membrane efflux protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 0.923
ACN13694.1
Outer membrane efflux protein.
  
  
 
0.915
acrB
AcrB; Cation/multidrug efflux pump, integral membrane protein AcrB (Acriflavin resistance family protein).
 
 0.904
ACN14692.1
RND efflux transporter, outer membrane lipoprotein.
     
 0.902
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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