STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspA6UspA6; Universal stress protein UspA. (153 aa)    
Predicted Functional Partners:
uspA7
UspA7; Universal stress protein UspA.
 
    
0.773
uspA14
UspA14; Universal stress protein UspA6.
  
     0.762
uspA2
UspA2; Universal stress protein UspA.
  
     0.761
usp2
Usp2; Universal stress protein Usp.
  
     0.755
uspA8
UspA8; Putative universal stress protein UspA.
  
     0.672
acuB3
AcuB3; Acetoin utilization protein AcuB.
       0.652
ACN17085.1
Hypothetical protein.
  
    0.403
ACN17082.1
Sigma-54 dependent DNA-binding response regulator (NtrC family proten).
     
 0.402
ACN17083.1
Two-component sensory box histidine kinase (N:ATP-binding domain-C:sensory box histidine kinase).
     
 0.402
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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