STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uspA7UspA7; Universal stress protein UspA. (160 aa)    
Predicted Functional Partners:
tmcA1
TmcA1; Acidic type II cytochrome TmcA1 (TpII-c3).
  
 
 0.840
tmcB2
TmcB2; Cytoplasmic Fe-S oxidoreductase (4Fe-4S ferredoxin).
      
 0.802
uspA6
UspA6; Universal stress protein UspA.
 
    
0.773
acuB3
AcuB3; Acetoin utilization protein AcuB.
       0.675
uspA8
UspA8; Putative universal stress protein UspA.
  
     0.634
ACN17083.1
Two-component sensory box histidine kinase (N:ATP-binding domain-C:sensory box histidine kinase).
     
 0.414
ACN17082.1
Sigma-54 dependent DNA-binding response regulator (NtrC family proten).
     
 0.413
ACN17085.1
Hypothetical protein.
  
    0.413
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.