STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
glpR1GlpR1; HTH-type glycerol-3-phosphate regulon repressor GlpR (DeoR family protein). (272 aa)    
Predicted Functional Partners:
pfkB1
PfkB1; Carbohydrate kinase family protein PfkB1; Belongs to the carbohydrate kinase PfkB family.
 
  
 0.927
ACN17194.1
Hypothetical protein.
       0.773
sucC4
SucC4; succinyl-CoA synthetase, beta subunit SucC3 (GNAT domain family protein).
    
   0.698
sucD4
SucD4; succinyl-CoA synthetase, alpha subunit SucD4 (SCS-alpha).
    
   0.698
mtp
Mtp; Multiphosphoryl transfer protein Mtp (PTS system, EIIA, EIIB, EIII-Fru transfer domains).
 
  
 0.682
ACN16274.1
Predicted polyketide synthase.
  
  
 0.590
ACN13981.1
HTH-type transcriptional repressor (LacI family protein).
  
  
 0.563
ACN16399.1
Putative amino-acid acetyltransferase.
  
  
 0.537
rpiB
RpiB; Ribose-5-phosphate isomerase RpiB (phosphoriboisomerase B).
  
  
 0.514
ACN17191.1
Conserved hypothetical protein.
       0.507
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.