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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rbr4Rbr4; Rubrerythrin family protein. (192 aa)    
Predicted Functional Partners:
dfx
Dfx; Non-heme iron protein Dfx (desulfoferrodoxin) (Superoxide dismutase).
 
  
 0.847
hydA1
HydA1; Fe-only fusion hydrogenase HydA1 (fusion protein consisting of small subunit HydA, large subunit HydB and 4Fe-4S domain).
 
    
 0.670
hydA2
HydA2; Fe-only fusion hydrogenase HydA2 (fusion protein consisting of small subunit HydA, large subunit HydB and 4Fe-4S domain).
 
    
 0.488
ACN13206.1
Metallo-beta-lactamase family protein (IMP dehydrogenase/GMP reductase:Beta-lactamase-like).
 
  
 0.430
prxU
PrxU; Selenocysteine-containing peroxiredoxin PrxU (selenocysteine protein).
  
  
 0.413
furA
FurA; Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.405
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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