STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pspFPspF; Psp operon transcriptional activator PspF. (341 aa)    
Predicted Functional Partners:
pspA2
PspA2; Phage shock protein PspA2.
 
 
 
 0.814
rpoN
RpoN; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.748
pspC
PspC; Phage shock protein PspC.
 
     0.717
dsbD
DsbD; Thiol-disulfide interchange protein DsbD [precursor].
       0.545
ACN17278.1
Putative thioredoxin.
       0.507
cheA2
CheA2; Chemotaxis protein CheA.
  
 
 0.501
ACN17279.1
Conserved hypothetical protein.
       0.483
flhA
FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the FHIPEP (flagella/HR/invasion proteins export pore) family.
  
  
 0.426
flhF
FlhF; Flagella associated GTP-binding protein FlhF.
  
  
 0.424
fliG
FliG; Flagellar motor switch protein FliG.
  
  
 0.423
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.