STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ecaBEcaB; Carbonic anhydrase EcaB (Carbonate dehydratase). (318 aa)    
Predicted Functional Partners:
fdhC
FdhC; Predicted formate transporter FdhC.
  
  
 0.870
ACN15705.1
Conserved hypothetical protein.
  
 
 
 0.813
ACN14398.1
Carbonic anhydrase / acetyltransferase family protein.
    
 
 0.786
ACN17084.1
Conserved hypothetical protein.
    
 
 0.782
xpt
Xpt; Converts the preformed base xanthine, a product of nucleic acid breakdown, to xanthosine 5'-monophosphate (XMP), so it can be reused for RNA or DNA synthesis.
   
  
 0.558
apt1
Apt1; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
  
 0.558
apt2
Apt2; Adenine phosphoribosyltransferase Apt.
   
  
 0.558
trkA3
TrkA3; Na+/H+ antiporter (TrkA-N:TrkA-C).
  
  
 0.473
ACN17750.1
Putative methyl-accepting chemotaxis protein.
    
 0.461
ACN17339.1
Hypothetical protein.
       0.439
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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