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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspC5AspC5; Aspartate aminotransferase AspC. (389 aa)    
Predicted Functional Partners:
pheA
PheA; Chorismate mutase/prephenate dehydratase PheA (Includes: chorismate mutase; prephenate dehydratase).
 
  
 0.888
dctM9
DctM9; TRAP-type C4-dicarboxylate permease, large subunit DctM9.
       0.773
ACN17344.1
Conserved hypothetical protein.
       0.773
dctQ9
DctQ9; TRAP-type C4-dicarboxylate permease, small subunit DctQ9.
       0.642
ACN16274.1
Predicted polyketide synthase.
  
 
 0.530
uppS
UppS; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
 
  
 0.500
dctP9
DctP9; TRAP-type C4-dicarboxylate transporter, periplasmic component DctP9.
       0.495
dapA
DapA; Catalyzes the condensation of (S)-aspartate-beta-semialdehyde [(S)-ASA] and pyruvate to 4-hydroxy-tetrahydrodipicolinate (HTPA).
 
  
 0.494
ACN15661.1
Putative polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
 
  
 0.492
serA2
SerA2; D-3-phosphoglycerate dehydrogenase (PGDH) SerA; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
 0.476
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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