STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gspAGspA; General secretion pathway protein GspA. (444 aa)    
Predicted Functional Partners:
exeA1
ExeA1; Type II secretory pathway, component ExeA (ATPase).
  
     0.775
exeA5
ExeA5; Type II secretory pathway, component ExeA (ATPase).
  
     0.775
ACN17349.1
Conserved hypothetical protein.
       0.774
exeA3
ExeA3; Type II secretory pathway, component ExeA (ATPase).
  
     0.772
exeA4
ExeA4; Type II secretory pathway, component ExeA (ATPase).
  
     0.772
gumC1
GumC1; Protein GumC involved in exopolysaccharide biosynthesis.
 
     0.708
ACN15079.1
Conserved hypothetical protein.
 
    0.566
ACN15085.1
Uncharacterized protein involved in methicillin resistance.
 
     0.530
ACN13530.1
Conserved hypothetical protein.
 
     0.514
ACN15082.1
Polysaccharide deacetylase family protein.
 
     0.509
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.