STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hgdAHgdA; 2-hydroxyglutaryl-CoA dehydratase, subunit alpha HgdA. (409 aa)    
Predicted Functional Partners:
hgdC1
HgdC1; Activator of 2-hydroxyglutaryl-CoA dehydratase HgdC.
 
 
 0.961
hgdB1
HgdB1; 2-hydroxyglutaryl-CoA dehydratase, beta subunit HbdB.
 
  
 0.956
hgdC2
HgdC2; Activator of (R)-2-hydroxyglutaryl-CoA dehydratase HgdC.
 
 
 0.873
ACN17401.1
Putative 2-hydroxyglutaryl-CoA dehydratase, beta subunit.
 
  
 0.763
ACN13907.1
Putative (R)-2-hydroxyglutaryl-CoA dehydratase, beta subunit.
 
  
 0.733
ACN15294.1
Hypothetical protein.
  
 
 0.517
ACN17361.1
HTH-type transcriptional regulator (TetR family protein).
     
 0.508
hgdB2
HgdB2; benzoyl-CoA reductase/2-hydroxyglutaryl-CoA dehydratase subunit HgdB.
 
  
0.507
gcdA1
GcdA1; glutaconyl-CoA decarboxylase GcdA.
 
   
 0.506
gcdA2
GcdA2; glutaconyl-CoA decarboxylase GcdA.
 
   
 0.506
Your Current Organism:
Desulfobacterium autotrophicum
NCBI taxonomy Id: 177437
Other names: D. autotrophicum HRM2, Desulfobacterium autotrophicum HRM2, Desulfobacterium autotrophicum str. HRM2, Desulfobacterium autotrophicum strain HRM2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.